Jingbo Zhou

Jingbo Zhou

Westlake University Zhejiang University

Hi there! ๐Ÿ‘‹ I am Jingbo Zhou (ๅ‘จ้–ๅš), a Ph.D. student at CAIRI, Westlake University and Zhejiang University, advised by Chair Prof. Stan Z. Li (IEEE Fellow). Before Joining Westlake, I received my B.E. degree of Big Data Science and Technology from Jilin University.

My research interest includes Foundation Model and AI4Science, especially in the Computational Biochemistry. If you are interested, feel free to contact me for future collaborations through Email or WeChat.

๐Ÿ”Ž Research

โ€œMan is the measure of all thingsโ€

a) Foundation Model

  • Graph Foundation Model
  • Multimodal Model

b) AI for Science

  • Computational Biochemistry


๐Ÿ”ฅ News

  • 2024.09: โœจโœจโœจ One co-authored paper on RAG boosting denovo peptide sequencing was accepted by NeurIPS 2024 Workshop AIDrugX (spotlight).
  • 2024.10: ๐Ÿ†๐Ÿ†๐Ÿ† I am awarded NeurIPS Scholar Award.
  • 2024.09: ๐Ÿ•ถ๏ธ๐Ÿ•ถ๏ธ๐Ÿ•ถ๏ธ I serve as a reviewer for AISTATS 2025.
  • 2024.09: โœจโœจโœจ Two papers on de novo peptide sequencing were accepted by NeurIPS 2024.
  • 2024.09: โœจโœจโœจ One paper on deep GNN was accepted by NeurIPS 2024.
  • 2024.08: ๐Ÿ•ถ๏ธ๐Ÿ•ถ๏ธ๐Ÿ•ถ๏ธ I serve as a reviewer for ICLR 2025.
  • 2024.05: ๐Ÿ•ถ๏ธ๐Ÿ•ถ๏ธ๐Ÿ•ถ๏ธ I serve as a reviewer for NeurIPS 2024.
  • 2024.06: ๐ŸŽ“๐ŸŽ“๐ŸŽ“ I obtained a Bachelor of Science degree from Jilin University.
  • 2023.12: ๐Ÿ†๐Ÿ†๐Ÿ† I received the Wang Xianghao Scholarship (็Ž‹ๆน˜ๆตฉๅฅ–ๅญฆ้‡‘).


๐Ÿ“ƒ Publications

โ€  Equal Contribution

NeurIPS 2024
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NovoBench: Benchmarking Deep Learning-based \emph{De Novo} Sequencing Methods in Proteomics
Jingbo Zhou†, Shaorong Chen†, Jun Xia†, Sizhe Liu, Tianze Ling, Wenjie Du, Yue Liu, Jianwei Yin, Stan Z. Li
NeurIPS 2024
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Deep Graph Neural Networks via Posteriori-Sampling-based Node-Adaptative Residual Module
Jingbo Zhou†, Yixuan Du†, Ruqiong Zhang†, Jun Xia, Zhizhi Yu, Zelin Zang, Di Jin, Carl Yang, Rui Zhang, Stan Z. Li
NeurIPS 2024
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AdaNovo: Adaptive \emph{De Novo} Peptide Sequencing with Conditional Mutual Information
Jun Xia†, Shaorong Chen†, Jingbo Zhou†, Xiaojun Shan, Wenjie Du, Zhangyang Gao, Cheng Tan, Bozhen Hu, Jiangbin Zheng, Stan Z. Li
NeurIPS 2024 AIDrugX
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Bridging the Gap between Database Search and \emph{De Novo} Peptide Sequencing with SearchNovo
Jun Xia†, Sizhe Liu†, Jingbo Zhou†, Shaorong Chen, hongxin xiang, Zicheng Liu, Yue Liu, Stan Z. Li

๐Ÿ“– Educations

  • 2024.09 - 2029.06, Ph.D., Engineering College, Westlake University & Zhejiang University, Hangzhou.
  • 2020.09 - 2024.06, Undergraduate, Software College, Jilin Univeristy, Changchun.

๐Ÿ’ฌ Service

Conference Reviewer

  • Reviewer for ICLRโ€™2025
  • Reviewer for NeurIPSโ€™2024
  • Reviewer for AISTATSโ€™2025